Ensembl Mouse

 

Explore the Mus musculus genome

Karyotype

Click on a chromosome for a closer view

chromosome 1 chromosome 2 chromosome 3 chromosome 4 chromosome 5 chromosome 6 chromosome 7 chromosome 8 chromosome 9 chromosome 10 chromosome 11 chromosome 12 chromosome 13 chromosome 14 chromosome 15 chromosome 16 chromosome 17 chromosome 18 chromosome 19 chromosome X chromosome Y chromosome MT Mouse karyotype selector

Jump directly to sequence position

Chromosome: or region
From (bp):
To (bp):

About the Mouse genome

Assembly

Ensembl Mouse is based on the NCBI m35 mouse assembly (December 2005, strain C57BL/6J).

Mouse Genome Sequencing ConsortiumThe Mouse Genome Sequencing Consortium is a joint project between The Whitehead Institute/MIT Center for Genome Research, The Washington University Genome Sequencing Center, The Wellcome Trust Sanger Institute and EMBL - EBI to provide the Mouse genome sequence to the world. We work closely with other Mouse groups to provide an integrated resource (see below for credits).

Annotation

This site provides a full Ensembl gene build for the above assembly. There are some major changes in the assembly; for more details see the NCBI build statistics .

Modifications to the systems have further improved the gene set. 95% of the known genes and 68% of the novel genes from build m34 retain the same Ensembl gene ids in this release. There will also be a new build on m36 soon.

What's New in Ensembl 38

Mus musculus News

  • New Mouse assembly and genebuild
    Ensembl Mouse is now based on the NCBI m35 assembly, released in December 2005.
    Read more...
  • cDNA Updates
    The Ensembl Human and Mouse cDNA database have received their regular updates.
  • Compara whole genome alignments

    The following updates have been made to ensembl_compara.
    Read more...

  • Updates to variation displays

    The following pages have new features.
    Read more...

  • New variation data
    Ensembl Human and Mouse have new variation databases. Human has the SNPs from dbSNP125 mapped to the new assembly, whilst in Mouse, strain polymorphism data from Celera reads are now viewable in Mart.

More news...

Statistics

Assembly: NCBI m35, Dec 2005
Genebuild: Ensembl, Mar 2006
Database version: 38.35
Known genes: 20,306
Novel genes: 3,950
Pseudogenes: 1,266
RNA genes: 1,752
Genscan gene predictions: 73,504
Gene exons: 245,035
Gene transcripts: 33,252
Base Pairs: 2,676,244,419
Golden Path Length: 2,580,820,112
Most common InterPro domains: Top 40 Top 500

Links

 

© 2009 WTSI / EBI. Ensembl is available to download for public use - please see the code licence for details.

                
Ensembl v38 - Apr 2006
Help