Ensembl S.cerevisiae

 

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About the S. cerevisiae genome

Assembly and Annotation

Saccharomyces cerevisiaeThe data on this site is a direct import of the Saccharomyces Genome Database dataset for the Saccharomyces cerevisiae S288C genome. No additional genebuild was carried out, but a series of blast runs was done to provide ESTs, Swall hits, and other similarity data.

We have included S.cerevisiae into the Ensembl system to allow people to access the data through the Ensembl user interface (both for visualisation and data mining) and to provide cross-species integration through our comparative genomics resources (such as homologous gene links and protein family/domain pages).

The canonical data for S.cerevisiae is managed at SGD.

Image courtesy American Society for Microbiology

What's New in Ensembl 38

Saccharomyces cerevisiae News

There is no Saccharomyces cerevisiae-specific news this release.

General News

  • New navigation options in ContigView

    ContigView navigation has been enhanced with new popup menus and navigation features.
    Read more...

  • New xrefs, including unmapped objects

    The following xrefs have been added/updated.
    Read more...

  • Change of database name - ESTs
    In the last couple of releases, features other than ESTs have been included in the [species]_est_nn_xx database.
    Read more...
  • FeatureView
    FeatureView has been reorganised to make it easier to add new kinds of features.
    Read more...
  • Uniprot/SPTREMBL
    The status of Uniprot/SPTREMBL in the external_db table has been changed from KNOWN to PRED, since this database provides computer-annotated protein sequences rather than known proteins.

More news...

Statistics

Assembly: SGD 1, Nov 2005
Genebuild: SGD, Nov 2005
Database version: 38.1d
Known genes: 6,680
Pseudogenes: 21
RNA genes: 397
Genscan gene predictions: 5,077
Genefinder gene predictions: 3,311
Gene exons: 7,026
Gene transcripts: 6,680
Base Pairs: 12,156,590
Golden Path Length: 12,156,590
Most common InterPro domains: Top 40 Top 500

 

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Ensembl v38 - Apr 2006
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